C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000134595 sox5-001 ENSDARG00000011582 7955 - 4:16050433-16123966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENSDART00000134595
Transcript ID Heart Kidney
ENSDART00000134595 0.554±0.18 0.464±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y0 CIL_0006Y0_0001 CGP 4:15954038-16124134
CIL_0007NR CIL_0007NR_0003 UCNEbase 4:15983315-16239186

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038815 Sox5-001 protein_coding Mus_musculus 8e-32 145
ENSMUST00000072804 Sox6-201 protein_coding Mus_musculus 0 283
ENSMUST00000077160 Sox5-002 protein_coding Mus_musculus 7e-32 145
ENSMUST00000106612 Sox6-202 protein_coding Mus_musculus 0 283
ENSMUST00000111748 Sox5-003 protein_coding Mus_musculus 1e-18 100
ENSMUST00000111749 Sox5-005 protein_coding Mus_musculus 7e-32 145
ENSMUST00000129050 Sox5-007 retained_intron Mus_musculus 2e-24 119
ENSMUST00000139478 Sox5-012 processed_transcript Mus_musculus 1e-22 110
ENSMUST00000141102 Sox5-009 retained_intron Mus_musculus 8e-23 113
ENSMUST00000142294 Sox5-006 retained_intron Mus_musculus 3e-32 145
ENSMUST00000149451 Sox5-008 processed_transcript Mus_musculus 6e-23 113
ENSMUST00000150087 Sox5-011 retained_intron Mus_musculus 6e-33 145
ENSMUST00000166207 Sox6-203 protein_coding Mus_musculus 0 283
ENSMUST00000166877 Sox6-204 protein_coding Mus_musculus 0 283
ENSMUST00000169129 Sox6-205 protein_coding Mus_musculus 0 283
ENSMUST00000170367 Sox5-201 protein_coding Mus_musculus 8e-32 145
ENST00000316399 SOX6-001 protein_coding Homo_sapiens 0 272
ENST00000381381 SOX5-201 protein_coding Homo_sapiens 3e-33 148
ENST00000396356 SOX6-201 protein_coding Homo_sapiens 0 272
ENST00000441133 SOX5-004 protein_coding Homo_sapiens 5e-34 148
ENST00000451604 SOX5-002 protein_coding Homo_sapiens 3e-33 148
ENST00000527619 SOX6-003 protein_coding Homo_sapiens 0 272
ENST00000527840 SOX6-007 processed_transcript Homo_sapiens 0 235
ENST00000528252 SOX6-002 protein_coding Homo_sapiens 0 272
ENST00000528429 SOX6-012 protein_coding Homo_sapiens 0 272
ENST00000537393 SOX5-008 protein_coding Homo_sapiens 2e-33 148
ENST00000538083 SOX5-010 protein_coding Homo_sapiens 2e-23 113
ENST00000541536 SOX5-009 protein_coding Homo_sapiens 2e-27 128
ENST00000546136 SOX5-003 protein_coding Homo_sapiens 7e-27 128

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