C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530044 DENND5A-003 ENSG00000184014 9606 - 11:9139459-9265087 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000530044
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000530044 1.852±0.00 5.524±0.00 3.454±0.00 1.186±0.00 3.781±1.85 0.526±0.00 3.794±0.00 2.412±0.00 0.455±0.00 0.975±0.00 4.787±0.00 3.549±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000499 CIL_000499_0001 CGP 11:9020391-9265390
CIL_0001HO CIL_0001HO_0002 CGP 11:9138825-9314780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016020 IBA membrane
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080437 Dennd5a-001 protein_coding Mus_musculus 0 4955
ENSMUST00000106722 Dennd5a-002 protein_coding Mus_musculus 0 4636
ENSDART00000060545 dennd5a-201 protein_coding Danio_rerio 0 1783
ENSMUST00000154002 Dennd5a-003 retained_intron Mus_musculus 0 1458
ENSMUST00000151923 Dennd5a-004 processed_transcript Mus_musculus 0 597
ENSMUST00000130354 Dennd5a-008 retained_intron Mus_musculus 0 446
ENSMUST00000139579 Dennd5a-005 processed_transcript Mus_musculus 0 316
ENSMUST00000156858 Dennd5a-007 retained_intron Mus_musculus 0 215

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