C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534353 PAX6-024 ENSG00000007372 9606 - 11:31801578-31804619 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138365 Pax6-021 processed_transcript Mus_musculus 0 606
ENSMUST00000154643 Pax6-014 retained_intron Mus_musculus 0 606
ENSMUST00000140173 Pax6-019 processed_transcript Mus_musculus 0 606
ENSMUST00000167211 Pax6-201 protein_coding Mus_musculus 0 604
ENSMUST00000156216 Pax6-017 protein_coding Mus_musculus 0 604
ENSMUST00000090391 Pax6-013 protein_coding Mus_musculus 0 604
ENSMUST00000111085 Pax6-008 protein_coding Mus_musculus 0 604
ENSMUST00000111086 Pax6-001 protein_coding Mus_musculus 0 604
ENSMUST00000145744 Pax6-022 processed_transcript Mus_musculus 0 464
ENSMUST00000155081 Pax6-023 processed_transcript Mus_musculus 0 307
ENSMUST00000135412 Pax6-020 processed_transcript Mus_musculus 0 307
ENSMUST00000153011 Pax6-018 processed_transcript Mus_musculus 0 307
ENSMUST00000111082 Pax6-012 protein_coding Mus_musculus 0 307
ENSMUST00000111083 Pax6-009 protein_coding Mus_musculus 0 307
ENSMUST00000090397 Pax6-011 protein_coding Mus_musculus 0 307
ENSMUST00000111087 Pax6-002 protein_coding Mus_musculus 0 307
ENSMUST00000123000 Pax6-025 retained_intron Mus_musculus 0 233
ENSMUST00000154302 Pax6-024 retained_intron Mus_musculus 0 233

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