C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154643 Pax6-014 ENSMUSG00000027168 10090 + 2:105682535-105696353 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverLungOvaryPlacentaTestisENSMUST00000154643
Transcript ID Colon Liver Lung Ovary Placenta Testis
ENSMUST00000154643 0.115±0.05 0.021±0.00 0.084±0.00 0.178±0.00 0.024±0.01 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145946 pax6b-001 protein_coding Danio_rerio 0 678
ENSDART00000066224 pax6a-201 protein_coding Danio_rerio 0 628
ENSDART00000128877 pax6a-203 protein_coding Danio_rerio 0 628
ENSDART00000129319 pax6a-204 protein_coding Danio_rerio 0 628
ENSDART00000124577 pax6a-202 protein_coding Danio_rerio 0 628
ENSDART00000131523 pax6a-005 protein_coding Danio_rerio 0 628
ENSDART00000148420 pax6a-001 protein_coding Danio_rerio 0 628
ENSDART00000066225 pax6a-002 protein_coding Danio_rerio 0 628
ENSDART00000014572 pax6b-201 protein_coding Danio_rerio 0 281
ENSDART00000139544 pax6a-008 protein_coding Danio_rerio 0 281
ENSDART00000133390 pax6a-009 protein_coding Danio_rerio 0 279
ENSDART00000132425 pax6a-006 protein_coding Danio_rerio 0 211
ENST00000241001 PAX6-002 protein_coding Homo_sapiens 0 1365
ENST00000379107 PAX6-011 protein_coding Homo_sapiens 0 1365
ENST00000379109 PAX6-004 protein_coding Homo_sapiens 0 1365
ENST00000379111 PAX6-005 protein_coding Homo_sapiens 0 1365
ENST00000379115 PAX6-001 protein_coding Homo_sapiens 0 1365
ENST00000379123 PAX6-003 protein_coding Homo_sapiens 0 1365
ENST00000379129 PAX6-009 protein_coding Homo_sapiens 0 1365
ENST00000379132 PAX6-008 protein_coding Homo_sapiens 0 1365
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 0 1365
ENST00000423822 PAX6-012 protein_coding Homo_sapiens 0 302
ENST00000438681 PAX6-013 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000455099 PAX6-016 protein_coding Homo_sapiens 0 320
ENST00000464174 PAX6-010 retained_intron Homo_sapiens 0 1090
ENST00000470027 PAX6-006 retained_intron Homo_sapiens 0 2169
ENST00000471303 PAX6-014 processed_transcript Homo_sapiens 0 549
ENST00000474783 PAX6-017 retained_intron Homo_sapiens 0 329
ENST00000481563 PAX6-015 processed_transcript Homo_sapiens 0 634
ENST00000494377 PAX6-007 retained_intron Homo_sapiens 0 1371
ENST00000524853 PAX6-021 protein_coding Homo_sapiens 0 231
ENST00000530373 PAX6-028 processed_transcript Homo_sapiens 0 691
ENST00000530714 PAX6-025 processed_transcript Homo_sapiens 0 246
ENST00000531910 PAX6-027 processed_transcript Homo_sapiens 0 893
ENST00000532916 PAX6-030 retained_intron Homo_sapiens 0 518
ENST00000533156 PAX6-029 processed_transcript Homo_sapiens 0 379
ENST00000533333 PAX6-019 retained_intron Homo_sapiens 0 1365
ENST00000534353 PAX6-024 processed_transcript Homo_sapiens 0 606
ENST00000534390 PAX6-026 retained_intron Homo_sapiens 0 331
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 1365

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