C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111085 Pax6-008 ENSMUSG00000027168 10090 + 2:105675433-105697344 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000132 IMP establishment of mitotic spindle orientation
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001709 IMP cell fate determination
GO:0001764 IMP neuron migration
GO:0001933 IMP negative regulation of protein phosphorylation
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0002088 IMP lens development in camera-type eye
GO:0003309 IMP type B pancreatic cell differentiation
GO:0003322 IMP pancreatic A cell development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0007224 IDA smoothened signaling pathway
GO:0007409 IMP axonogenesis
GO:0007411 IMP axon guidance
GO:0007420 IMP brain development
GO:0007435 IMP salivary gland morphogenesis
GO:0008134 IPI transcription factor binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0009786 IMP regulation of asymmetric cell division
GO:0009950 IMP dorsal/ventral axis specification
GO:0009952 IMP anterior/posterior pattern specification
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010468 IMP regulation of gene expression
GO:0010628 IMP positive regulation of gene expression
GO:0019901 IPI protein kinase binding
GO:0021543 IMP pallium development
GO:0021778 IMP oligodendrocyte cell fate specification
GO:0021796 IMP cerebral cortex regionalization
GO:0021797 IMP forebrain anterior/posterior pattern specification
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0021902 IMP commitment of neuronal cell to specific neuron type in forebrain
GO:0021905 IMP forebrain-midbrain boundary formation
GO:0021912 IMP regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification
GO:0021913 IMP regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification
GO:0021918 IMP regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment
GO:0021978 IMP telencephalon regionalization
GO:0021983 IMP pituitary gland development
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0030154 IMP cell differentiation
GO:0030216 IMP keratinocyte differentiation
GO:0030334 IMP regulation of cell migration
GO:0030858 IMP positive regulation of epithelial cell differentiation
GO:0030900 IMP forebrain development
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032808 IMP lacrimal gland development
GO:0033365 IMP protein localization to organelle
GO:0035035 IDA histone acetyltransferase binding
GO:0042462 IMP eye photoreceptor cell development
GO:0043010 IMP camera-type eye development
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045165 IGI cell fate commitment
GO:0045665 IGI negative regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048505 IMP regulation of timing of cell differentiation
GO:0048596 IGI embryonic camera-type eye morphogenesis
GO:0048708 IMP astrocyte differentiation
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0050767 IMP regulation of neurogenesis
GO:0060041 IGI retina development in camera-type eye
GO:0070410 IDA co-SMAD binding
GO:0070412 IDA R-SMAD binding
GO:0071837 IPI HMG box domain binding
GO:2000178 IMP negative regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128877 pax6a-203 protein_coding Danio_rerio 0 983
ENSDART00000148420 pax6a-001 protein_coding Danio_rerio 0 983
ENSDART00000129319 pax6a-204 protein_coding Danio_rerio 0 970
ENSDART00000131523 pax6a-005 protein_coding Danio_rerio 0 970
ENSDART00000145946 pax6b-001 protein_coding Danio_rerio 0 821
ENSDART00000066224 pax6a-201 protein_coding Danio_rerio 0 817
ENSDART00000124577 pax6a-202 protein_coding Danio_rerio 0 817
ENSDART00000066225 pax6a-002 protein_coding Danio_rerio 0 817
ENSDART00000133390 pax6a-009 protein_coding Danio_rerio 0 621
ENSDART00000132425 pax6a-006 protein_coding Danio_rerio 0 553
ENSDART00000139544 pax6a-008 protein_coding Danio_rerio 0 470
ENSDART00000014572 pax6b-201 protein_coding Danio_rerio 0 414
ENST00000241001 PAX6-002 protein_coding Homo_sapiens 0 1698
ENST00000379107 PAX6-011 protein_coding Homo_sapiens 0 2854
ENST00000379109 PAX6-004 protein_coding Homo_sapiens 0 1692
ENST00000379111 PAX6-005 protein_coding Homo_sapiens 0 1698
ENST00000379115 PAX6-001 protein_coding Homo_sapiens 0 2132
ENST00000379123 PAX6-003 protein_coding Homo_sapiens 0 1698
ENST00000379129 PAX6-009 protein_coding Homo_sapiens 0 3227
ENST00000379132 PAX6-008 protein_coding Homo_sapiens 0 2826
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 0 3260
ENST00000423822 PAX6-012 protein_coding Homo_sapiens 0 438
ENST00000438681 PAX6-013 protein_coding Homo_sapiens 0 322
ENST00000455099 PAX6-016 protein_coding Homo_sapiens 0 420
ENST00000464174 PAX6-010 retained_intron Homo_sapiens 0 1116
ENST00000470027 PAX6-006 retained_intron Homo_sapiens 0 1365
ENST00000471303 PAX6-014 processed_transcript Homo_sapiens 0 876
ENST00000474783 PAX6-017 retained_intron Homo_sapiens 0 335
ENST00000481563 PAX6-015 processed_transcript Homo_sapiens 0 880
ENST00000494377 PAX6-007 retained_intron Homo_sapiens 0 1365
ENST00000524853 PAX6-021 protein_coding Homo_sapiens 0 368
ENST00000525535 PAX6-020 protein_coding Homo_sapiens 5.04467e-44 182
ENST00000527769 PAX6-022 retained_intron Homo_sapiens 9.94922e-44 180
ENST00000530373 PAX6-028 processed_transcript Homo_sapiens 0 691
ENST00000530714 PAX6-025 processed_transcript Homo_sapiens 0 246
ENST00000531910 PAX6-027 processed_transcript Homo_sapiens 0 859
ENST00000532175 PAX6-023 retained_intron Homo_sapiens 9.94922e-44 180
ENST00000532916 PAX6-030 retained_intron Homo_sapiens 0 518
ENST00000533156 PAX6-029 processed_transcript Homo_sapiens 0 377
ENST00000533333 PAX6-019 retained_intron Homo_sapiens 0 1692
ENST00000534353 PAX6-024 processed_transcript Homo_sapiens 0 604
ENST00000534390 PAX6-026 retained_intron Homo_sapiens 0 501
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 3260

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