C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154302 Pax6-024 ENSMUSG00000027168 10090 + 2:105681712-105684982 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000154302
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000154302 0.057±0.04 0.067±0.03 0.015±0.00 0.118±0.05 0.178±0.04 0.050±0.01 0.100±0.04 0.100±0.08 0.094±0.04 0.013±0.00 0.511±0.24 0.007±0.00 0.228±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137235 pax6b-006 processed_transcript Danio_rerio 7.00649e-43 180
ENSDART00000138689 pax6b-007 processed_transcript Danio_rerio 7.00649e-43 180
ENST00000241001 PAX6-002 protein_coding Homo_sapiens 0 370
ENST00000379107 PAX6-011 protein_coding Homo_sapiens 0 231
ENST00000379109 PAX6-004 protein_coding Homo_sapiens 0 370
ENST00000379111 PAX6-005 protein_coding Homo_sapiens 0 370
ENST00000379115 PAX6-001 protein_coding Homo_sapiens 0 231
ENST00000379123 PAX6-003 protein_coding Homo_sapiens 0 370
ENST00000379129 PAX6-009 protein_coding Homo_sapiens 0 231
ENST00000379132 PAX6-008 protein_coding Homo_sapiens 0 370
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 0 231
ENST00000423822 PAX6-012 protein_coding Homo_sapiens 0 231
ENST00000438681 PAX6-013 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000455099 PAX6-016 protein_coding Homo_sapiens 0 231
ENST00000470027 PAX6-006 retained_intron Homo_sapiens 0 318
ENST00000471303 PAX6-014 processed_transcript Homo_sapiens 0 375
ENST00000481563 PAX6-015 processed_transcript Homo_sapiens 0 237
ENST00000494377 PAX6-007 retained_intron Homo_sapiens 0 457
ENST00000524853 PAX6-021 protein_coding Homo_sapiens 0 279
ENST00000530714 PAX6-025 processed_transcript Homo_sapiens 0 374
ENST00000533156 PAX6-029 processed_transcript Homo_sapiens 0 233
ENST00000533333 PAX6-019 retained_intron Homo_sapiens 0 824
ENST00000534353 PAX6-024 processed_transcript Homo_sapiens 0 233
ENST00000534390 PAX6-026 retained_intron Homo_sapiens 0 453
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 231

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