C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIH, polypeptide 1, 62kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534641 GTF2H1-003 ENSG00000110768 9606 + 11:18322567-18366813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000534641
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000534641 2.698±0.00 2.236±0.00 3.302±0.00 2.538±0.00 2.081±0.00 1.510±0.75 2.419±0.00 1.974±0.00 2.267±0.00 2.486±0.00 4.997±2.28 3.211±0.84 11.225±5.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041D CIL_00041D_0002 CGP 11:18278668-18367044
CIL_000445 CIL_000445_0001 CGP 11:18322295-18408425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 TAS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000439 IEA core TFIIH complex
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0004672 IDA protein kinase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005675 IDA holo TFIIH complex
GO:0006200 IDA ATP catabolic process
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 IEA:TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006468 IDA protein phosphorylation
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006774 Gtf2h1-001 protein_coding Mus_musculus 0 2115
ENSMUST00000128420 Gtf2h1-003 nonsense_mediated_decay Mus_musculus 0 2017
ENSMUST00000107644 Gtf2h1-002 protein_coding Mus_musculus 0 1929
ENSMUST00000144708 Gtf2h1-004 retained_intron Mus_musculus 0 881
ENSMUST00000165031 Gtf2h1-005 protein_coding Mus_musculus 0 244

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