C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000445_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110768-ENSG00000134333 CGP 9606 11:18322295-18408425
GeneTranscriptPositionBiotype
ENSG00000110768 (GTF2H1)
general transcription factor IIH, polypeptide 1, 62kDa 		ENST00000265963 (GTF2H1-001) 18322596-18367044 protein_coding
ENST00000418116 (GTF2H1-017) 18322557-18360770 retained_intron
ENST00000453096 (GTF2H1-002) 18322295-18366261 protein_coding
ENST00000524753 (GTF2H1-014) 18338217-18348831 protein_coding
ENST00000525831 (GTF2H1-006) 18322569-18335884 protein_coding
ENST00000526282 (GTF2H1-013) 18352098-18358642 retained_intron
ENST00000526461 (GTF2H1-007) 18322568-18333454 retained_intron
ENST00000526630 (GTF2H1-011) 18351572-18365898 protein_coding
ENST00000528427 (GTF2H1-012) 18352018-18358102 retained_intron
ENST00000530496 (GTF2H1-010) 18347104-18366275 protein_coding
ENST00000531757 (GTF2H1-004) 18322547-18335904 processed_transcript
ENST00000532227 (GTF2H1-008) 18322582-18333609 retained_intron
ENST00000534213 (GTF2H1-005) 18322567-18333183 processed_transcript
ENST00000534641 (GTF2H1-003) 18322567-18366813 protein_coding
ENST00000543932 (GTF2H1-018) 18332662-18341608 retained_intron
ENST00000607664 (GTF2H1-019) 18341409-18341958 retained_intron
ENSG00000134333 (LDHA)
lactate dehydrogenase A 		ENST00000227157 (LDHA-003) 18394586-18408218 protein_coding
ENST00000375710 (LDHA-023) 18399726-18407584 retained_intron
ENST00000379412 (LDHA-005) 18396278-18407847 protein_coding
ENST00000396222 (LDHA-002) 18394562-18408218 protein_coding
ENST00000422447 (LDHA-001) 18394388-18408425 protein_coding
ENST00000430553 (LDHA-010) 18394562-18407667 protein_coding
ENST00000460405 (LDHA-008) 18398866-18403784 retained_intron
ENST00000469976 (LDHA-006) 18394561-18397398 retained_intron
ENST00000478970 (LDHA-009) 18394612-18401025 protein_coding
ENST00000486690 (LDHA-017) 18396818-18405495 nonsense_mediated_decay
ENST00000494573 (LDHA-007) 18394563-18400360 retained_intron
ENST00000495052 (LDHA-004) 18394704-18400936 protein_coding
ENST00000535451 (LDHA-014) 18394563-18399521 protein_coding
ENST00000536528 (LDHA-021) 18394563-18403811 nonsense_mediated_decay
ENST00000537296 (LDHA-022) 18398630-18405574 retained_intron
ENST00000538451 (LDHA-024) 18402535-18407740 retained_intron
ENST00000539814 (LDHA-016) 18394563-18400934 nonsense_mediated_decay
ENST00000540430 (LDHA-201) 18396266-18408218 protein_coding
ENST00000541097 (LDHA-019) 18394563-18407158 nonsense_mediated_decay
ENST00000542179 (LDHA-020) 18396554-18407281 protein_coding
ENST00000543445 (LDHA-013) 18394560-18402891 protein_coding
ENST00000543695 (LDHA-015) 18394563-18403759 nonsense_mediated_decay
ENST00000545215 (LDHA-011) 18394563-18407642 nonsense_mediated_decay
ENST00000545467 (LDHA-018) 18394562-18400872 nonsense_mediated_decay
ENSG00000256006 (AC084117.3)
 ENST00000496975 (AC084117.3-001) 18405609-18406731 sense_intronic
ENSG00000264603 (MIR3159)
microRNA 3159 		ENST00000584572 (MIR3159-201) 18387787-18387860 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000445_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006599-ENSMUSG00000063229 CGP 10090 7:46796103-46855627
GeneTranscriptPositionBiotype
ENSMUSG00000006599 (Gtf2h1)
general transcription factor II H, polypeptide 1 		ENSMUST00000006774 (Gtf2h1-001) 46796103-46823800 protein_coding
ENSMUST00000107644 (Gtf2h1-002) 46796671-46823275 protein_coding
ENSMUST00000128420 (Gtf2h1-003) 46801687-46822909 nonsense_mediated_decay
ENSMUST00000144708 (Gtf2h1-004) 46808452-46815418 retained_intron
ENSMUST00000165031 (Gtf2h1-005) 46796114-46805027 protein_coding
ENSMUSG00000063229 (Ldha)
lactate dehydrogenase A 		ENSMUST00000005051 (Ldha-002) 46847131-46855626 protein_coding
ENSMUST00000048209 (Ldha-001) 46845839-46855627 protein_coding
ENSMUST00000092621 (Ldha-006) 46845863-46852003 protein_coding
ENSMUST00000124696 (Ldha-005) 46845843-46848145 retained_intron
ENSMUST00000125862 (Ldha-004) 46845843-46849045 processed_transcript
ENSMUST00000132157 (Ldha-008) 46847505-46850996 retained_intron
ENSMUST00000133062 (Ldha-007) 46846097-46849051 processed_transcript
ENSMUST00000147535 (Ldha-003) 46841475-46851994 protein_coding
ENSMUSG00000087298 (Gm9392)
predicted pseudogene 9392 		ENSMUST00000119337 (Gm9392-001) 46820864-46821417 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000445_0001ENSG00000110768ENST00000265963ENST00000418116ENST00000453096ENST00000524753ENST00000534641ENST00000607664ENSG00000134333ENST00000227157ENST00000379412ENST00000396222ENST00000422447ENST00000430553ENST00000486690ENST00000536528ENST00000542179ENST00000545215ENSG00000256006ENST00000496975ENSG00000264603ENST00000584572CIL_000445_0002ENSMUSG00000006599ENSMUST00000006774ENSMUST00000107644ENSMUST00000128420ENSMUST00000165031ENSMUSG00000063229ENSMUST00000005051ENSMUST00000048209ENSMUSG00000087298ENSMUST00000119337
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110768 ENST00000265963 2.241±0.00 3.096±0.00 N/A 4.000±1.52 3.008±1.46 3.139±0.00 1.628±1.08 3.434±2.61 2.224±0.46 0.682±0.00 1.045±0.00 4.527±2.40 2.664±0.58 6.054±2.16
ENST00000418116 N/A N/A 1.000±0.00 2.941±0.00 5.532±0.00 3.329±0.00 2.096±0.00 2.855±0.00 5.001±0.00 4.780±0.00 1.643±0.00 5.520±0.00 N/A N/A
ENST00000453096 N/A 1.449±0.00 0.553±0.00 N/A N/A N/A 1.774±0.00 1.473±0.00 N/A 1.086±0.00 N/A N/A 3.054±0.00 4.168±0.00
ENST00000524753 N/A N/A N/A 2.934±0.00 N/A N/A N/A N/A N/A 2.422±0.00 N/A N/A N/A N/A
ENST00000525831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534641 2.698±0.00 2.236±0.00 N/A 3.302±0.00 2.538±0.00 2.081±0.00 1.510±0.75 2.419±0.00 1.974±0.00 2.267±0.00 2.486±0.00 4.997±2.28 3.211±0.84 11.225±5.19
ENST00000543932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.225±0.00 N/A N/A N/A
ENSG00000134333 ENST00000227157 N/A N/A 5.631±0.00 N/A N/A 7.921±0.00 N/A N/A N/A N/A 20.537±0.00 N/A N/A N/A
ENST00000375710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379412 86.087±0.00 57.218±0.00 N/A 45.787±0.00 60.097±0.00 71.105±0.00 25.103±0.00 97.913±0.00 N/A 51.816±0.00 22.753±0.00 78.699±28.37 41.016±13.93 29.533±12.50
ENST00000396222 N/A N/A 6.526±0.00 28.468±0.00 18.992±0.00 12.519±0.00 8.054±0.00 37.384±0.00 27.746±0.00 21.722±0.00 44.437±0.00 23.221±0.20 36.776±3.64 N/A
ENST00000422447 N/A N/A 4.715±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430553 N/A N/A 6.576±0.00 27.995±0.00 25.500±0.00 48.461±26.58 9.371±0.00 67.582±0.00 36.614±0.00 32.177±0.00 104.912±0.00 68.265±27.35 107.846±0.00 55.152±0.00
ENST00000460405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 252.364±0.00 224.640±0.00 103.493±0.00
ENST00000494573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 276.120±0.00 N/A 119.643±0.00
ENST00000537296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542179 N/A N/A N/A N/A 11.823±0.00 N/A N/A N/A N/A N/A N/A N/A 41.739±0.00 N/A
ENST00000543445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545215 219.482±0.00 155.820±0.00 7.122±0.00 35.016±11.28 135.052±124.00 81.902±61.45 11.827±6.93 116.293±0.00 122.736±0.00 43.483±0.00 29.575±2.23 28.695±0.00 37.081±0.00 110.172±0.00
ENST00000545467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000256006 ENST00000496975 0.251±0.00 0.638±0.00 N/A 0.119±0.00 0.585±0.08 0.179±0.00 0.652±0.50 0.342±0.19 0.235±0.00 0.514±0.00 N/A 0.539±0.22 N/A 0.235±0.00
ENSG00000264603 ENST00000584572 N/A 2.619±0.00 N/A N/A 2.168±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.481±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006599 ENSMUST00000006774 5.993±0.37 11.382±1.79 11.732±0.54 13.600±2.80 4.273±1.35 6.076±0.88 2.856±0.49 6.636±0.24 7.883±4.84 5.078±0.68 4.224±0.93 6.296±1.15 23.072±4.81 16.385±5.87
ENSMUST00000107644 N/A N/A N/A 7.820±0.00 1.315±0.00 N/A 0.532±0.00 N/A N/A N/A N/A 4.774±2.32 22.019±6.59 25.842±0.00
ENSMUST00000128420 N/A N/A N/A N/A 2.081±0.00 N/A N/A N/A N/A N/A 1.598±0.00 N/A N/A N/A
ENSMUST00000144708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165031 N/A 14.511±1.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.190±0.00 N/A N/A
ENSMUSG00000063229 ENSMUST00000005051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 426.215±144.13
ENSMUST00000048209 556.530±124.01 156.780±24.96 159.968±8.40 75.984±35.16 787.375±305.56 497.340±46.86 339.993±19.73 317.029±14.57 459.743±208.86 173.193±21.61 1404.629±78.11 235.916±63.92 369.288±196.12 52.193±23.72
ENSMUST00000092621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087298 ENSMUST00000119337 0.550±0.12 0.596±0.09 1.332±0.25 1.339±0.75 1.624±0.29 0.948±0.27 0.449±0.22 1.063±0.37 1.026±0.47 1.384±0.32 0.621±0.09 1.042±0.28 1.112±0.46 0.702±0.39

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