C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | RNA binding protein, fox-1 homolog (C. elegans) 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000535565  |
RBFOX1-005 |
ENSG00000078328 |
9606 | + |
16:6483179-7709776  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0000EQ | CIL_0000EQ_0001 | CGP | 16:5084304-7713338 |
| CIL_000882 | CIL_000882_0001 | VISTA | 16:5441186-6042172 |
| CIL_0000EP | CIL_0000EP_0001 | CGP | 16:6019094-8590193 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003723 | IEA | RNA binding |
| GO:0005634 | IEA | nucleus |
| GO:0006397 | IEA | mRNA processing |
| GO:0008380 | IEA | RNA splicing |
| GO:0043484 | IEA | regulation of RNA splicing |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000115841
|
Rbfox1-202 | protein_coding | Mus_musculus | 0 | 612 |
|
ENSMUST00000056416
|
Rbfox1-201 | protein_coding | Mus_musculus | 0 | 503 |
|
ENSDART00000150888
|
rbfox1-005 | protein_coding | Danio_rerio | 0 | 385 |
|
ENSDART00000122037
|
rbfox1-001 | protein_coding | Danio_rerio | 1e-24 | 119 |
|
ENSDART00000151546
|
rbfox1-006 | protein_coding | Danio_rerio | 8e-16 | 90 |
|
ENSDART00000055534
|
rbfox1-002 | retained_intron | Danio_rerio | 0.00000000000004 | 84 |
|
ENSDART00000151143
|
rbfox1-003 | protein_coding | Danio_rerio | 0.0000000000005 | 81 |
