C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538886 GGA3-001 ENSG00000125447 9606 - 17:75236599-75261600 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000538886
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000538886 6.198±0.00 9.380±0.00 4.498±0.00 2.991±1.55 4.222±0.00 5.823±0.00 8.610±0.00 10.909±0.00 6.526±0.11 5.386±0.41 7.752±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IW CIL_0007IW_0001 CGP 17:75205659-75262363
CIL_0007I1 CIL_0007I1_0001 CGP 17:75236599-75266373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005802 IEA:IDA trans-Golgi network
GO:0006886 IEA:NAS intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030306 IEA:IDA ADP-ribosylation factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019135 Gga3-001 protein_coding Mus_musculus 0 1694
ENSMUST00000123831 Gga3-009 processed_transcript Mus_musculus 0 1182
ENSMUST00000156173 Gga3-003 nonsense_mediated_decay Mus_musculus 0 1053
ENSMUST00000106508 Gga3-002 protein_coding Mus_musculus 0 841
ENSMUST00000128437 Gga3-006 processed_transcript Mus_musculus 0 606
ENSMUST00000123485 Gga3-010 processed_transcript Mus_musculus 0 577
ENSMUST00000125097 Gga3-007 protein_coding Mus_musculus 0 291
ENSMUST00000148782 Gga3-008 processed_transcript Mus_musculus 0 291
ENSMUST00000154832 Gga3-011 processed_transcript Mus_musculus 0 252
ENSMUST00000132503 Gga3-005 processed_transcript Mus_musculus 0.000000000000002 90
ENSMUST00000041587 Gga1-201 protein_coding Mus_musculus 0.0000000000003 82

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