C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546378 HOXC11-001 ENSG00000123388 9606 + 12:53973126-53977643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalPlacentaENST00000546378
Transcript ID Adrenal Placenta
ENST00000546378 0.063±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TO CIL_0002TO_0002 CGP 12:53954834-53977643
CIL_00003G CIL_00003G_0001 CGP 12:53973126-53990279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IEA skeletal system development
GO:0001656 IEA metanephros development
GO:0001759 IEA organ induction
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007492 TAS endoderm development
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0042733 IEA embryonic digit morphogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060272 IEA embryonic skeletal joint morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001701 Hoxc11-001 protein_coding Mus_musculus 0 2102

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