C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123397 Rapgef3-004 ENSMUSG00000022469 10090 - 15:97746528-97767587 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000123397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000123397 3.836±1.54 2.525±0.59 1.068±0.04 0.825±0.15 1.879±0.49 2.159±0.00 2.188±0.29 0.244±0.07 0.660±0.11 2.232±0.27 1.351±0.84 1.038±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YT CIL_0005YT_0002 CGP 15:97711019-97767972
CIL_0002OC CIL_0002OC_0002 CGP 15:97744770-97792692

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389212 RAPGEF3-017 protein_coding Homo_sapiens 0 2748
ENST00000395358 RAPGEF3-003 protein_coding Homo_sapiens 0 1792
ENST00000395360 RAPGEF3-002 retained_intron Homo_sapiens 0 981
ENST00000405493 RAPGEF3-201 protein_coding Homo_sapiens 0 2723
ENST00000449771 RAPGEF3-001 protein_coding Homo_sapiens 0 2767
ENST00000466322 RAPGEF3-012 protein_coding Homo_sapiens 0 773
ENST00000473777 RAPGEF3-008 retained_intron Homo_sapiens 0 300
ENST00000476259 RAPGEF3-009 retained_intron Homo_sapiens 0 196
ENST00000479866 RAPGEF3-004 retained_intron Homo_sapiens 0 1175
ENST00000482843 RAPGEF3-005 retained_intron Homo_sapiens 0 1310
ENST00000488250 RAPGEF3-006 retained_intron Homo_sapiens 0 739
ENST00000490387 RAPGEF3-010 retained_intron Homo_sapiens 0 255
ENST00000494764 RAPGEF3-011 retained_intron Homo_sapiens 0 296
ENST00000495465 RAPGEF3-019 nonsense_mediated_decay Homo_sapiens 0 1020
ENST00000495953 RAPGEF3-013 protein_coding Homo_sapiens 0 536
ENST00000547856 RAPGEF3-016 nonsense_mediated_decay Homo_sapiens 0 2111
ENST00000548434 RAPGEF3-014 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000548919 RAPGEF3-007 protein_coding Homo_sapiens 0 1814
ENST00000549151 RAPGEF3-018 protein_coding Homo_sapiens 0 2723

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