C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177352 Rapgef3-007 ENSMUSG00000022469 10090 - 15:97745016-97767062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177352
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177352 4.751±1.09 5.933±0.52 4.759±1.80 8.771±1.93 3.925±0.49 11.908±1.53 0.674±0.16 12.133±3.43 1.443±0.31 8.621±1.95 2.383±0.14 1.420±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YT CIL_0005YT_0002 CGP 15:97711019-97767972
CIL_0002OC CIL_0002OC_0002 CGP 15:97744770-97792692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IDA guanyl-nucleotide exchange factor activity
GO:0005952 IEA cAMP-dependent protein kinase complex
GO:0008603 IEA cAMP-dependent protein kinase regulator activity
GO:0045859 IEA regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389212 RAPGEF3-017 protein_coding Homo_sapiens 0 3297
ENST00000395358 RAPGEF3-003 protein_coding Homo_sapiens 0 1749
ENST00000395360 RAPGEF3-002 retained_intron Homo_sapiens 0 1554
ENST00000405493 RAPGEF3-201 protein_coding Homo_sapiens 0 3295
ENST00000449771 RAPGEF3-001 protein_coding Homo_sapiens 0 3297
ENST00000466322 RAPGEF3-012 protein_coding Homo_sapiens 0 773
ENST00000473777 RAPGEF3-008 retained_intron Homo_sapiens 0 300
ENST00000476259 RAPGEF3-009 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000479866 RAPGEF3-004 retained_intron Homo_sapiens 0 1131
ENST00000482843 RAPGEF3-005 retained_intron Homo_sapiens 0 1267
ENST00000488250 RAPGEF3-006 retained_intron Homo_sapiens 0 1312
ENST00000490387 RAPGEF3-010 retained_intron Homo_sapiens 0 254
ENST00000494764 RAPGEF3-011 retained_intron Homo_sapiens 0 296
ENST00000495465 RAPGEF3-019 nonsense_mediated_decay Homo_sapiens 0 1020
ENST00000495953 RAPGEF3-013 protein_coding Homo_sapiens 0 568
ENST00000547856 RAPGEF3-016 nonsense_mediated_decay Homo_sapiens 0 2684
ENST00000548434 RAPGEF3-014 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000548919 RAPGEF3-007 protein_coding Homo_sapiens 0 1814
ENST00000549151 RAPGEF3-018 protein_coding Homo_sapiens 0 3295

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