C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain and actin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552720 LIMA1-005 ENSG00000050405 9606 - 12:50177006-50283456 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungOvaryENST00000552720
Transcript ID Bladder Breast Colon Heart Liver Lung Ovary
ENST00000552720 2.674±0.00 6.131±0.00 8.289±0.00 0.320±0.00 3.489±0.00 3.465±0.00 6.121±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000LJ CIL_0000LJ_0001 CGP 12:50129306-50283546
CIL_00051T CIL_00051T_0001 CGP 12:50175788-50396622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0015629 IDA actin cytoskeleton
GO:0030835 IEA negative regulation of actin filament depolymerization
GO:0051015 IEA actin filament binding
GO:0051017 IEA actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073691 Lima1-001 protein_coding Mus_musculus 0 924
ENSMUST00000109024 Lima1-003 protein_coding Mus_musculus 0 795
ENSMUST00000172119 Lima1-004 retained_intron Mus_musculus 0 233
ENSMUST00000171450 Lima1-002 retained_intron Mus_musculus 0 196

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