C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIX homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553535 SIX1-002 ENSG00000126778 9606 - 14:60645270-60653026 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000553535
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000553535 0.412±0.00 0.213±0.00 0.089±0.08 3.272±0.00 0.067±0.00 0.021±0.00 1.619±0.00 6.749±5.43 0.363±0.32 0.022±0.02 1.201±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0001 VISTA 14:60353481-60955733
CIL_00036B CIL_00036B_0002 CGP 14:60508951-60658259
CIL_0006SM CIL_0006SM_0002 CGP 14:60643415-60724348

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050029 Six1-001 protein_coding Mus_musculus 0 606
ENSMUST00000176091 Six1-003 processed_transcript Mus_musculus 0 440
ENSMUST00000175677 Six1-002 processed_transcript Mus_musculus 1e-19 102

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