C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554963 MED6-012 ENSG00000133997 9606 - 14:70581257-70600643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000554963
Transcript ID Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000554963 2.225±0.17 2.591±0.20 1.841±0.00 1.148±0.26 1.778±0.00 2.529±0.00 4.350±0.00 2.447±0.00 2.395±0.00 3.651±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WZ CIL_0002WZ_0002 CGP 14:70581257-70675360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006357 IEA:TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016592 IEA:IDA mediator complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161211 Med6-001 protein_coding Mus_musculus 0 1026
ENSMUST00000002756 Med6-201 protein_coding Mus_musculus 0 1009
ENSMUST00000161902 Med6-002 protein_coding Mus_musculus 0 771
ENSMUST00000159187 Med6-003 retained_intron Mus_musculus 0 702
ENSMUST00000161598 Med6-004 protein_coding Mus_musculus 0 697

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