C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIX homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554986 SIX1-005 ENSG00000126778 9606 - 14:60644696-60658259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000554986
Transcript ID Adipose Adrenal Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000554986 1.292±0.00 0.060±0.00 1.107±0.73 0.015±0.00 0.083±0.00 1.200±0.00 5.405±3.54 0.683±0.78 0.045±0.01 2.000±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0001 VISTA 14:60353481-60955733
CIL_00036B CIL_00036B_0002 CGP 14:60508951-60658259
CIL_0006SM CIL_0006SM_0002 CGP 14:60643415-60724348

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050029 Six1-001 protein_coding Mus_musculus 0 728
ENSMUST00000176091 Six1-003 processed_transcript Mus_musculus 0 440
ENSMUST00000175677 Six1-002 processed_transcript Mus_musculus 2e-18 99

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