C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117383 Sec11a-003 ENSMUSG00000025724 10090 - 7:80915661-80947780 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000117383
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000117383 8.919±2.44 7.742±2.71 10.661±3.89 8.236±1.66 4.247±0.33 5.448±1.02 10.152±2.22 11.827±2.42 16.281±6.61 8.689±2.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0002 VISTA 7:80488938-81090184
CIL_0000N2 CIL_0000N2_0002 CGP 7:80890723-80905076
CIL_0003XQ CIL_0003XQ_0003 CGP 7:80902227-80947780
CIL_0003XP CIL_0003XP_0003 CGP 7:80904889-81045164

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008236 IEA serine-type peptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268220 SEC11A-001 protein_coding Homo_sapiens 0 459
ENST00000455959 SEC11A-002 protein_coding Homo_sapiens 0 448
ENST00000518383 SEC11B-001 processed_pseudogene Homo_sapiens 0 305
ENST00000558134 SEC11A-008 protein_coding Homo_sapiens 0 401
ENST00000558196 SEC11A-003 protein_coding Homo_sapiens 0 324
ENST00000558217 SEC11A-009 protein_coding Homo_sapiens 0 375
ENST00000558924 SEC11A-006 retained_intron Homo_sapiens 0 279
ENST00000559376 SEC11A-007 retained_intron Homo_sapiens 5e-19 100
ENST00000559729 SEC11A-201 protein_coding Homo_sapiens 0 449
ENST00000560266 SEC11A-004 protein_coding Homo_sapiens 0 401
ENST00000560409 SEC11A-005 nonsense_mediated_decay Homo_sapiens 0 401

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