C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119980 Sec11a-006 ENSMUSG00000025724 10090 - 7:80916089-80947780 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000119980
Transcript ID Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000119980 14.709±3.23 13.958±0.00 6.420±1.39 10.097±3.31 6.839±0.01 7.649±2.05 24.168±29.91 125.372±40.23 19.886±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0002 VISTA 7:80488938-81090184
CIL_0000N2 CIL_0000N2_0002 CGP 7:80890723-80905076
CIL_0003XQ CIL_0003XQ_0003 CGP 7:80902227-80947780
CIL_0003XP CIL_0003XP_0003 CGP 7:80904889-81045164

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008236 IEA serine-type peptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268220 SEC11A-001 protein_coding Homo_sapiens 0 726
ENST00000455959 SEC11A-002 protein_coding Homo_sapiens 0 592
ENST00000518383 SEC11B-001 processed_pseudogene Homo_sapiens 0 529
ENST00000558134 SEC11A-008 protein_coding Homo_sapiens 0 575
ENST00000558196 SEC11A-003 protein_coding Homo_sapiens 0 455
ENST00000558217 SEC11A-009 protein_coding Homo_sapiens 0 375
ENST00000558924 SEC11A-006 retained_intron Homo_sapiens 8e-19 100
ENST00000559376 SEC11A-007 retained_intron Homo_sapiens 3e-21 108
ENST00000559729 SEC11A-201 protein_coding Homo_sapiens 0 287
ENST00000560266 SEC11A-004 protein_coding Homo_sapiens 0 575
ENST00000560409 SEC11A-005 nonsense_mediated_decay Homo_sapiens 0 577

Loading