C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026818 Sec11a-001 ENSMUSG00000025724 10090 - 7:80915377-80947780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026818
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026818 12.746±2.20 49.873±6.16 28.582±1.28 6.544±2.03 5.705±2.20 8.400±1.90 16.555±5.05 24.458±15.81 9.443±2.64 10.196±1.24 5.719±1.61 49.196±39.65 9.826±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0002 VISTA 7:80488938-81090184
CIL_0000N2 CIL_0000N2_0002 CGP 7:80890723-80905076
CIL_0003XQ CIL_0003XQ_0003 CGP 7:80902227-80947780
CIL_0003XP CIL_0003XP_0003 CGP 7:80904889-81045164

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008236 IEA serine-type peptidase activity
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268220 SEC11A-001 protein_coding Homo_sapiens 0 1251
ENST00000455959 SEC11A-002 protein_coding Homo_sapiens 0 1086
ENST00000518383 SEC11B-001 processed_pseudogene Homo_sapiens 0 558
ENST00000558134 SEC11A-008 protein_coding Homo_sapiens 0 575
ENST00000558196 SEC11A-003 protein_coding Homo_sapiens 0 455
ENST00000558217 SEC11A-009 protein_coding Homo_sapiens 0 623
ENST00000558924 SEC11A-006 retained_intron Homo_sapiens 0 621
ENST00000559376 SEC11A-007 retained_intron Homo_sapiens 0 529
ENST00000559729 SEC11A-201 protein_coding Homo_sapiens 0 793
ENST00000560266 SEC11A-004 protein_coding Homo_sapiens 0 625
ENST00000560409 SEC11A-005 nonsense_mediated_decay Homo_sapiens 0 577

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