C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 11 (autosomal recessive)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559511 SPG11-007 ENSG00000104133 9606 - 15:44562697-44584527 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryTestisENST00000559511
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Testis
ENST00000559511 9.026±0.00 5.448±0.00 5.372±0.00 5.523±0.00 10.785±0.00 5.533±0.00 6.397±0.00 12.436±6.07 17.393±3.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0001 CGP 15:44427234-44563029
CIL_0004DI CIL_0004DI_0001 CGP 15:44537057-44663678
CIL_0004DJ CIL_0004DJ_0001 CGP 15:44562696-44711316

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036450 Spg11-001 protein_coding Mus_musculus 0 1158
ENSMUST00000180600 Gm3650-001 unprocessed_pseudogene Mus_musculus 0 915
ENSMUST00000028668 Eif3j1-001 protein_coding Mus_musculus 0 224

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