C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 7 (herpes virus-associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563961 USP7-006 ENSG00000187555 9606 - 16:8892772-8963422 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000563961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000563961 10.338±0.00 10.881±0.00 1.038±0.00 12.672±0.00 5.885±3.53 8.446±3.05 4.310±3.19 10.911±0.00 6.285±0.00 5.719±0.00 7.927±5.26 12.425±7.55 12.831±8.34 30.549±12.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EV CIL_0000EV_0001 CGP 16:8852942-8964514
CIL_0000EN CIL_0000EN_0001 CGP 16:8892094-9121640

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160326 Usp7-003 nonsense_mediated_decay Mus_musculus 0 5304
ENSMUST00000160405 Usp7-001 protein_coding Mus_musculus 0 4745
ENSMUST00000161046 Usp7-002 protein_coding Mus_musculus 0 4466
ENSMUST00000162445 Usp7-004 processed_transcript Mus_musculus 0 4113
ENSDART00000150953 usp7-001 protein_coding Danio_rerio 0 2058
ENSDART00000024453 usp7-201 protein_coding Danio_rerio 0 1982
ENSMUST00000172505 Usp7-013 nonsense_mediated_decay Mus_musculus 0 1212
ENSMUST00000159287 Usp7-007 retained_intron Mus_musculus 0 641
ENSMUST00000162929 Usp7-005 retained_intron Mus_musculus 0 564
ENSMUST00000159281 Usp7-011 retained_intron Mus_musculus 0 331
ENSMUST00000159503 Usp7-009 retained_intron Mus_musculus 0 302
ENSMUST00000159509 Usp7-008 retained_intron Mus_musculus 0 287
ENSMUST00000159387 Usp7-006 retained_intron Mus_musculus 0 259
ENSMUST00000162141 Usp7-010 retained_intron Mus_musculus 0 228
ENSMUST00000173939 Usp7-012 retained_intron Mus_musculus 1e-37 163

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