C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformation related protein 53 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110648 Trp53bp1-001 ENSMUSG00000043909 10090 - 2:121194838-121271407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110648 5.348±2.41 3.806±0.43 7.189±1.01 22.948±2.97 3.562±1.09 3.520±0.94 1.773±0.22 2.100±0.31 3.494±2.71 3.999±1.08 1.914±0.42 6.083±1.48 4.373±0.98 4.912±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770
CIL_0005YA CIL_0005YA_0002 CGP 2:121170654-121271407
CIL_0005YB CIL_0005YB_0002 CGP 2:121193281-121310832

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0000781 IEA chromosome, telomeric region
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0002039 IEA p53 binding
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005737 IEA cytoplasm
GO:0006281 IDA DNA repair
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006974 ISO cellular response to DNA damage stimulus
GO:0008134 TAS transcription factor binding
GO:0035064 IEA methylated histone binding
GO:0042162 IDA telomeric DNA binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260383 TUBGCP4-001 protein_coding Homo_sapiens 0 202
ENST00000263801 TP53BP1-002 protein_coding Homo_sapiens 0 3413
ENST00000382039 TP53BP1-004 protein_coding Homo_sapiens 0 2815
ENST00000382044 TP53BP1-001 protein_coding Homo_sapiens 0 3570
ENST00000411772 TP53BP1-011 nonsense_mediated_decay Homo_sapiens 0 3404
ENST00000413546 TP53BP1-005 protein_coding Homo_sapiens 0 2167
ENST00000414758 TP53BP1-006 processed_transcript Homo_sapiens 0 261
ENST00000417342 TP53BP1-008 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000434561 TP53BP1-009 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000434595 TP53BP1-010 protein_coding Homo_sapiens 0 296
ENST00000450115 TP53BP1-014 protein_coding Homo_sapiens 0 3373
ENST00000476454 TP53BP1-003 retained_intron Homo_sapiens 0 2001
ENST00000561691 TUBGCP4-003 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000563147 TUBGCP4-011 protein_coding Homo_sapiens 0 198
ENST00000563963 TUBGCP4-004 retained_intron Homo_sapiens 0 243
ENST00000564079 TUBGCP4-002 protein_coding Homo_sapiens 0 736
ENST00000565548 TUBGCP4-012 protein_coding Homo_sapiens 0 202
ENST00000566251 TUBGCP4-010 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000571145 TP53BP1-016 processed_transcript Homo_sapiens 0 412
ENST00000572085 TP53BP1-015 retained_intron Homo_sapiens 0 2881
ENST00000605155 TP53BP1-018 processed_transcript Homo_sapiens 0 296

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