C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, T type, alpha 1H subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564927 CACNA1H-006 ENSG00000196557 9606 + 16:1211482-1221765 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000564927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000564927 4.065±0.00 2.671±0.00 1.094±0.00 0.351±0.00 0.749±0.00 23.797±0.00 1.129±0.00 2.660±0.00 1.120±0.00 3.322±0.00 0.576±0.00 20.295±14.01 1.075±0.45 10.228±0.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078496 Cacna1h-201 protein_coding Mus_musculus 0 2172
ENSMUST00000159610 Cacna1h-001 protein_coding Mus_musculus 0 2172
ENSMUST00000159048 Cacna1h-002 protein_coding Mus_musculus 0 1749
ENSMUST00000162155 Cacna1i-002 nonsense_mediated_decay Mus_musculus 0 1122
ENSMUST00000160424 Cacna1i-001 protein_coding Mus_musculus 0 1122
ENSMUST00000107788 Cacna1g-009 protein_coding Mus_musculus 0 898
ENSMUST00000107792 Cacna1g-004 protein_coding Mus_musculus 0 898
ENSMUST00000107785 Cacna1g-006 protein_coding Mus_musculus 0 841
ENSMUST00000107793 Cacna1g-008 protein_coding Mus_musculus 0 841
ENSMUST00000107791 Cacna1g-002 protein_coding Mus_musculus 0 841
ENSDART00000151012 si:ch73-379f7.5-001 protein_coding Danio_rerio 0 736
ENSDART00000145615 cacna1i-001 protein_coding Danio_rerio 0 708
ENSMUST00000021234 Cacna1g-201 protein_coding Mus_musculus 0 562
ENSMUST00000107789 Cacna1g-011 protein_coding Mus_musculus 0 562
ENSMUST00000107790 Cacna1g-010 protein_coding Mus_musculus 0 562
ENSMUST00000100561 Cacna1g-005 protein_coding Mus_musculus 0 562
ENSMUST00000103166 Cacna1g-003 protein_coding Mus_musculus 0 562
ENSMUST00000107786 Cacna1g-001 protein_coding Mus_musculus 0 562
ENSDART00000154869 cacna1ha-001 protein_coding Danio_rerio 0 562
ENSDART00000085210 cacna1ha-201 protein_coding Danio_rerio 0 560
ENSMUST00000161035 Cacna1h-008 protein_coding Mus_musculus 0 484
ENSDART00000085216 cacna1i-201 protein_coding Danio_rerio 0 444
ENSMUST00000159331 Cacna1h-010 retained_intron Mus_musculus 0 416
ENSMUST00000161658 Cacna1h-009 nonsense_mediated_decay Mus_musculus 0 285
ENSMUST00000024999 Tpsg1-001 protein_coding Mus_musculus 0.0000000002 73
ENSMUST00000162021 Tpsg1-004 protein_coding Mus_musculus 0.0000000002 73
ENSMUST00000160377 Tpsg1-002 protein_coding Mus_musculus 0.0000000002 73

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