C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578162 NPM1P2-001 ENSG00000266227 9606 + 18:26204869-26205904 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyMuscleOvaryTestisENST00000578162
Transcript ID Adipose Adrenal Breast Colon Kidney Muscle Ovary Testis
ENST00000578162 0.013±0.00 0.027±0.00 0.013±0.00 0.025±0.00 0.081±0.00 0.037±0.00 0.015±0.00 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0000QZ CIL_0000QZ_0001 CGP 18:26133852-26391685

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 795
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 649
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 649
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 595
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 496
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 1e-35 154

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