C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578806 RP11-692N5.2-001 ENSG00000266891 9606 - 18:9734882-9735602 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryPlacentaENST00000578806
Transcript ID Breast Colon Ovary Placenta
ENST00000578806 3.325±0.00 0.092±0.00 0.163±0.07 0.085±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 278
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 278
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 259
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 237
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 220
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 6e-26 121
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 0.00000001 64

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