C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 14044
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117531 Gm14044-001 ENSMUSG00000083483 10090 - 2:130384883-130385329 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaENSMUST00000117531
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000117531 0.115±0.00 0.042±0.01 0.128±0.04 0.122±0.00 0.116±0.00 0.071±0.04 0.123±0.00 0.265±0.08 0.355±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FX CIL_0000FX_0002 CGP 2:130295169-130397574

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 579
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 418
ENST00000415679 RP11-226L15.1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000424277 RPL27AP8-001 processed_pseudogene Homo_sapiens 0 357
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 0 259
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 374
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 468
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 556
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 473
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 0 193
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 401
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 1e-24 117
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 575
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 401
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 392
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 0 263
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000578806 RP11-692N5.2-001 processed_pseudogene Homo_sapiens 0 250

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