C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8451
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170338 RP23-323H18.3-001 ENSMUSG00000099471 10090 - 1:127282662-127283108 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170338
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170338 0.245±0.10 11.424±0.47 3.237±2.55 0.280±0.07 0.566±0.15 0.192±0.09 0.294±0.19 3.289±5.77 0.260±0.10 0.336±0.08 0.542±0.29 0.331±0.06 0.188±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J4 CIL_0001J4_0002 CGP 1:125913620-127488336
CIL_0003S3 CIL_0003S3_0003 CGP 1:127205015-127679548
CIL_0007T0 CIL_0007T0_0002 VISTA 1:127230775-127832241

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 579
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 429
ENST00000415679 RP11-226L15.1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000424277 RPL27AP8-001 processed_pseudogene Homo_sapiens 0 390
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 0 281
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 462
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 556
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 473
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 0 198
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 396
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 1e-24 117
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 575
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 396
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 387
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 0 257
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000578806 RP11-692N5.2-001 processed_pseudogene Homo_sapiens 0 255

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