C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligase III, DNA, ATP-dependent
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585941 LIG3-005 ENSG00000005156 9606 + 17:34980512-34994429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000585941
Transcript ID Heart
ENST00000585941 1.657±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055V CIL_00055V_0001 CGP 17:34580749-34981078
CIL_000745 CIL_000745_0001 CGP 17:34927859-34981078
CIL_00055Q CIL_00055Q_0001 CGP 17:34961530-35009743
CIL_00055O CIL_00055O_0001 CGP 17:34980494-35089319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003910 IEA DNA ligase (ATP) activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008270 IEA zinc ion binding
GO:0051103 IEA DNA ligation involved in DNA repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173727 Lig3-011 protein_coding Mus_musculus 0 1919
ENSMUST00000173347 Lig3-007 protein_coding Mus_musculus 0 1919
ENSMUST00000172609 Lig3-010 retained_intron Mus_musculus 0 1919
ENSMUST00000173722 Lig3-009 protein_coding Mus_musculus 0 1912
ENSMUST00000080461 Lig3-002 protein_coding Mus_musculus 0 1912
ENSMUST00000092849 Lig3-001 protein_coding Mus_musculus 0 1912
ENSMUST00000021039 Lig3-201 protein_coding Mus_musculus 0 1862
ENSMUST00000131537 Lig3-008 protein_coding Mus_musculus 0 1458
ENSMUST00000173009 Lig3-006 protein_coding Mus_musculus 0 1458

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