C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: notchless homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586869 NLE1-004 ENSG00000073536 9606 - 17:35128753-35142284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungOvaryTestisENST00000586869
Transcript ID Brain Colon Heart Kidney Liver Lung Ovary Testis
ENST00000586869 1.130±0.00 0.622±0.00 0.066±0.00 0.108±0.00 0.351±0.00 0.151±0.00 1.527±0.22 1.352±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0001 CGP 17:35092208-35130732
CIL_0003B9 CIL_0003B9_0001 CGP 17:35121579-35142315
CIL_0003K1 CIL_0003K1_0001 CGP 17:35128753-35189345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103213 Nle1-001 protein_coding Mus_musculus 0 1814
ENSMUST00000147915 Nle1-003 retained_intron Mus_musculus 0 843
ENSMUST00000126202 Nle1-002 nonsense_mediated_decay Mus_musculus 0 556
ENSMUST00000167196 Nle1-006 nonsense_mediated_decay Mus_musculus 0 527
ENSMUST00000140318 Nle1-004 retained_intron Mus_musculus 0 468
ENSMUST00000124109 Nle1-005 retained_intron Mus_musculus 6e-32 145

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