C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: notchless homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103213 Nle1-001 ENSMUSG00000020692 10090 - 11:82900768-82908411 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000103213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000103213 8.922±2.00 13.611±0.64 5.842±1.33 14.334±3.99 11.437±3.61 11.420±1.34 3.721±0.69 4.259±0.37 9.113±6.77 6.974±0.55 4.343±0.96 19.512±8.37 4.408±3.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0002 CGP 11:82876434-82900801
CIL_0003B9 CIL_0003B9_0002 CGP 11:82892124-82908411
CIL_0003K1 CIL_0003K1_0002 CGP 11:82900768-82943403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001826 IMP inner cell mass cell differentiation
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0007219 IDA Notch signaling pathway
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0045930 IMP negative regulation of mitotic cell cycle
GO:0061484 IMP hematopoietic stem cell homeostasis
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway
GO:2001268 IMP negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360831 NLE1-005 protein_coding Homo_sapiens 0 1168
ENST00000442241 NLE1-001 protein_coding Homo_sapiens 0 1868
ENST00000586869 NLE1-004 protein_coding Homo_sapiens 0 1814
ENST00000588019 NLE1-003 protein_coding Homo_sapiens 0 684
ENST00000588642 NLE1-007 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000589367 NLE1-002 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000593176 NLE1-008 processed_transcript Homo_sapiens 0 652

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