C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog C (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587834 SEC11C-001 ENSG00000166562 9606 + 18:59139477-59158836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000587834
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000587834 2.549±0.00 6.094±0.00 8.838±0.00 3.858±0.00 0.912±0.23 8.467±0.00 3.477±0.00 3.368±0.00 22.973±14.94 13.707±10.89 18.430±13.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006O6 CIL_0006O6_0001 CGP 18:59139477-59230774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0010467 TAS gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0050796 TAS regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025394 Sec11c-001 protein_coding Mus_musculus 0 1070
ENSMUST00000125552 Sec11c-006 processed_transcript Mus_musculus 0 907
ENSMUST00000126651 Sec11c-007 processed_transcript Mus_musculus 0 545
ENSMUST00000139538 Sec11c-003 retained_intron Mus_musculus 0 540
ENSMUST00000126432 Sec11c-002 nonsense_mediated_decay Mus_musculus 0 538
ENSMUST00000155668 Sec11c-005 processed_transcript Mus_musculus 0 305

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