C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide C pseudogene 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588011 SNRPCP20-001 ENSG00000267182 9606 - 16:5289200-5289409 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonENST00000588011
Transcript ID Breast Colon
ENST00000588011 1.265±0.00 1.720±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0001 CGP 16:5084304-7713338

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071006 Snrpc-001 protein_coding Mus_musculus 1.99965e-42 174
ENSMUST00000173338 Gm2991-001 processed_pseudogene Mus_musculus 9.99995e-41 169
ENSMUST00000120526 Gm15197-001 processed_pseudogene Mus_musculus 4.00001e-40 167
ENSMUST00000058951 Gm8849-201 pseudogene Mus_musculus 4.00001e-40 167
ENSMUST00000175770 Gm8974-001 processed_pseudogene Mus_musculus 5e-39 163
ENSMUST00000137581 Snrpc-002 retained_intron Mus_musculus 4e-20 100

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