C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog C (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588875 SEC11C-006 ENSG00000166562 9606 + 18:59139899-59158832 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588875
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588875 10.883±0.00 39.482±0.00 36.952±11.87 15.116±0.00 9.344±4.61 1.671±0.68 24.307±5.91 51.331±0.00 10.533±3.79 2.437±1.98 10.359±0.00 13.018±1.74 17.608±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006O6 CIL_0006O6_0001 CGP 18:59139477-59230774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025394 Sec11c-001 protein_coding Mus_musculus 0 673
ENSMUST00000125552 Sec11c-006 processed_transcript Mus_musculus 0 545
ENSMUST00000139538 Sec11c-003 retained_intron Mus_musculus 0 472
ENSMUST00000155668 Sec11c-005 processed_transcript Mus_musculus 0 305
ENSMUST00000126651 Sec11c-007 processed_transcript Mus_musculus 0 279
ENSMUST00000126432 Sec11c-002 nonsense_mediated_decay Mus_musculus 0 272

Loading