C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000595897 ARHGEF1-011 ENSG00000076928 9606 + 19:41897675-41907454 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartLiverLungOvaryTestisENST00000595897
Transcript ID Adrenal Bladder Brain Heart Liver Lung Ovary Testis
ENST00000595897 62.432±0.00 0.611±0.00 3.673±0.00 1.403±0.00 2.230±0.00 7.157±5.51 4.808±0.00 5.452±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UK CIL_0003UK_0002 CGP 19:41877120-41930150
CIL_0003VE CIL_0003VE_0001 CGP 19:41883161-41959390

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117419 Arhgef1-006 protein_coding Mus_musculus 0 898
ENSMUST00000047873 Arhgef1-003 protein_coding Mus_musculus 0 898
ENSMUST00000132751 Arhgef1-008 protein_coding Mus_musculus 0 894
ENSMUST00000145783 Arhgef1-005 processed_transcript Mus_musculus 0 894
ENSMUST00000098683 Arhgef1-001 protein_coding Mus_musculus 0 894
ENSMUST00000117796 Arhgef1-002 protein_coding Mus_musculus 0 894
ENSMUST00000132786 Arhgef1-015 processed_transcript Mus_musculus 0 523
ENSMUST00000126918 Arhgef1-014 retained_intron Mus_musculus 0 348
ENSMUST00000126484 Arhgef1-013 retained_intron Mus_musculus 0 315
ENSMUST00000129928 Arhgef1-012 retained_intron Mus_musculus 0 248

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