C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145783 Arhgef1-005 ENSMUSG00000040940 10090 + 7:24904358-24926589 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000145783
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000145783 10.390±0.59 9.515±1.11 7.601±0.00 48.215±30.65 6.471±0.81 7.219±2.83 8.066±2.55 4.253±1.87 28.860±4.09 3.014±1.95 12.724±3.54 12.605±7.73 2.035±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UK CIL_0003UK_0003 CGP 7:24897381-24926592
CIL_0003VE CIL_0003VE_0002 CGP 7:24902912-24972728

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337665 ARHGEF1-006 protein_coding Homo_sapiens 0 2080
ENST00000347545 ARHGEF1-001 protein_coding Homo_sapiens 0 2080
ENST00000354532 ARHGEF1-005 protein_coding Homo_sapiens 0 2071
ENST00000378152 ARHGEF1-007 protein_coding Homo_sapiens 0 1700
ENST00000594044 ARHGEF1-018 retained_intron Homo_sapiens 0 726
ENST00000594258 ARHGEF1-017 protein_coding Homo_sapiens 0 1112
ENST00000594521 ARHGEF1-015 protein_coding Homo_sapiens 0 601
ENST00000595723 ARHGEF1-022 protein_coding Homo_sapiens 0 767
ENST00000595897 ARHGEF1-011 retained_intron Homo_sapiens 0 894
ENST00000598444 ARHGEF1-021 retained_intron Homo_sapiens 3e-29 132
ENST00000598812 ARHGEF1-014 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000599589 ARHGEF1-009 protein_coding Homo_sapiens 0 1969
ENST00000599846 ARHGEF1-010 protein_coding Homo_sapiens 0 2350
ENST00000600274 ARHGEF1-002 retained_intron Homo_sapiens 0 2080
ENST00000600387 ARHGEF1-012 retained_intron Homo_sapiens 0 267
ENST00000600517 ARHGEF1-019 nonsense_mediated_decay Homo_sapiens 0 287

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