C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000600387 ARHGEF1-012 ENSG00000076928 9606 + 19:41883173-41890776 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverENST00000600387
Transcript ID Bladder Brain Colon Heart Kidney Liver
ENST00000600387 0.350±0.00 0.222±0.00 0.876±0.00 0.141±0.00 0.441±0.00 1.213±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UK CIL_0003UK_0002 CGP 19:41877120-41930150
CIL_0003VE CIL_0003VE_0001 CGP 19:41883161-41959390

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117796 Arhgef1-002 protein_coding Mus_musculus 0 429
ENSMUST00000047873 Arhgef1-003 protein_coding Mus_musculus 0 385
ENSMUST00000098683 Arhgef1-001 protein_coding Mus_musculus 0 364
ENSMUST00000127761 Arhgef1-004 retained_intron Mus_musculus 0 348
ENSMUST00000151121 Arhgef1-010 protein_coding Mus_musculus 0 267
ENSMUST00000117419 Arhgef1-006 protein_coding Mus_musculus 0 267
ENSMUST00000145783 Arhgef1-005 processed_transcript Mus_musculus 0 267

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