C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611048 ARHGEF4-203 ENSG00000136002 9606 + 2:130916651-131047263 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000611048
Transcript ID Placenta
ENST00000611048 0.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J9 CIL_0001J9_0001 CGP 2:130755435-131047263
CIL_0001J8 CIL_0001J8_0001 CGP 2:130836916-131093460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162599 Arhgef4-005 protein_coding Mus_musculus 0 1855
ENSMUST00000047664 Arhgef4-001 protein_coding Mus_musculus 0 1219
ENSMUST00000159747 Arhgef4-004 protein_coding Mus_musculus 0 1219
ENSMUST00000160855 Arhgef4-003 nonsense_mediated_decay Mus_musculus 0 532
ENSMUST00000159021 Arhgef4-006 protein_coding Mus_musculus 0 516
ENSMUST00000159059 Arhgef4-007 retained_intron Mus_musculus 0 403
ENSMUST00000162760 Arhgef4-002 retained_intron Mus_musculus 0 403
ENSMUST00000022566 Spata13-201 protein_coding Mus_musculus 0 202
ENSMUST00000162131 Spata13-009 protein_coding Mus_musculus 0 202
ENSMUST00000162945 Spata13-002 protein_coding Mus_musculus 0 202
ENSMUST00000160973 Spata13-001 protein_coding Mus_musculus 0 202

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