C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myelin expression factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616409 MYEF2-202 ENSG00000104177 9606 - 15:48142652-48178144 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyOvaryPlacentaTestisENST00000616409
Transcript ID Adipose Adrenal Brain Heart Kidney Ovary Placenta Testis
ENST00000616409 1.447±0.00 1.000±0.00 6.786±0.00 0.891±0.00 2.910±0.00 0.633±0.40 0.106±0.00 14.532±8.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0001 CGP 15:47184101-48142672
CIL_0004QO CIL_0004QO_0002 CGP 15:48120972-48178517
CIL_0004NI CIL_0004NI_0001 CGP 15:48134631-48203756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152367 Myef2-001 protein_coding Mus_musculus 0 2246
ENSMUST00000142718 Myef2-005 protein_coding Mus_musculus 0 1633
ENSMUST00000137091 Myef2-004 protein_coding Mus_musculus 0 1480
ENSMUST00000061419 Gm9833-201 protein_coding Mus_musculus 0 1480
ENSMUST00000149911 Myef2-009 retained_intron Mus_musculus 0 1303
ENSMUST00000067780 Myef2-201 protein_coding Mus_musculus 0 1299
ENSMUST00000147105 Myef2-003 protein_coding Mus_musculus 0 1299
ENSMUST00000110501 Myef2-008 nonsense_mediated_decay Mus_musculus 0 1299
ENSMUST00000089825 Myef2-002 protein_coding Mus_musculus 0 1264
ENSDART00000123823 myef2-202 protein_coding Danio_rerio 0 278
ENSDART00000082506 myef2-201 protein_coding Danio_rerio 0 261
ENSDART00000082504 myef2-001 protein_coding Danio_rerio 0 261
ENSDART00000142036 myef2-003 retained_intron Danio_rerio 6e-38 163

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