C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, heavy chain 11, smooth muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616439 MYH11-202 ENSG00000133392 9606 - 16:15703135-15857030 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000616439
Transcript ID Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000616439 21.875±0.00 0.624±0.00 18.494±0.00 89.989±0.00 99.239±0.00 63.017±18.90 22.890±10.08 797.880±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UO CIL_0006UO_0001 CGP 16:15594386-15726353
CIL_0006MU CIL_0006MU_0001 CGP 16:15643267-15857033
CIL_0002TD CIL_0002TD_0001 CGP 16:15703135-15888625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016459 IEA myosin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090287 Myh11-201 protein_coding Mus_musculus 0 7060
ENSMUST00000016771 Myh9-001 protein_coding Mus_musculus 0 3212
ENSDART00000041142 myh11a-001 protein_coding Danio_rerio 0 2796
ENSMUST00000092984 Myh10-008 protein_coding Mus_musculus 0 2494
ENSMUST00000102611 Myh10-001 protein_coding Mus_musculus 0 2494
ENSDART00000150939 myh10-002 protein_coding Danio_rerio 0 2377
ENSDART00000137105 myh9b-001 protein_coding Danio_rerio 0 2311
ENSDART00000046359 myh10-201 protein_coding Danio_rerio 0 2061
ENSDART00000151114 myh10-001 protein_coding Danio_rerio 0 2061
ENSDART00000092373 myh9b-201 protein_coding Danio_rerio 0 1668
ENSDART00000149823 myh9a-001 protein_coding Danio_rerio 0 1458
ENSDART00000011353 myh9a-201 protein_coding Danio_rerio 0 1306
ENSDART00000004854 myh11b-201 protein_coding Danio_rerio 0 1133
ENSDART00000105232 myh9a-202 protein_coding Danio_rerio 0 1123
ENSMUST00000018887 Myh10-002 protein_coding Mus_musculus 0 1035
ENSMUST00000107900 Myh14-201 protein_coding Mus_musculus 0 968
ENSMUST00000048102 Myh14-001 protein_coding Mus_musculus 0 968
ENSMUST00000107899 Myh14-002 protein_coding Mus_musculus 0 968
ENSMUST00000155765 Myh10-010 retained_intron Mus_musculus 0 854
ENSDART00000148622 myh11b-001 protein_coding Danio_rerio 0 843
ENSMUST00000182648 Myh14-007 protein_coding Mus_musculus 0 571
ENSMUST00000124844 Myh9-005 processed_transcript Mus_musculus 0 544
ENSMUST00000129453 Myh9-002 retained_intron Mus_musculus 0 544
ENSMUST00000126796 Myh9-004 retained_intron Mus_musculus 0 544
ENSMUST00000134878 Myh9-003 retained_intron Mus_musculus 0 433
ENSMUST00000123101 Myh9-006 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000125870 Myh14-003 processed_transcript Mus_musculus 0.00000000000004 86

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