Transcript ID | Breast |
---|---|
ENSMUST00000165113 | 6.702±0.00 |
Transcript Info |
||||||
Description: | TAR DNA binding protein | |||||
---|---|---|---|---|---|---|
Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000165113 | Tardbp-202 | ENSMUSG00000041459 | 10090 | - | 4:148612382-148626996 | protein_coding |
Expression Patterns
|
Conserved Regions | |||
---|---|---|---|
Region ID | Sub-Region | Region Type | Position |
CIL_0008JY | CIL_0008JY_0002 | VISTA | 4:148408124-149009196 |
CIL_0008JG | CIL_0008JG_0002 | VISTA | 4:148444314-149044861 |
CIL_0008RU | CIL_0008RU_0002 | VISTA | 4:148508781-149109416 |
CIL_0008S2 | CIL_0008S2_0002 | VISTA | 4:148555953-149160332 |
CIL_00082Y | CIL_00082Y_0002 | VISTA | 4:148576108-149176659 |
CIL_00085P | CIL_00085P_0002 | VISTA | 4:148597228-149198219 |
Gene Ontology | ||
---|---|---|
GO ID | Evidence Type | GO Description |
GO:0000166 | IEA | nucleotide binding |
GO:0001205 | IDA | RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription |
GO:0003676 | IEA | nucleic acid binding |
GO:0005515 | IPI | protein binding |
GO:0045944 | IDA | positive regulation of transcription from RNA polymerase II promoter |
Homologs | |||||
ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
ENST00000240185 | TARDBP-001 | protein_coding | Homo_sapiens | 0 | 2385 |
ENST00000315091 | TARDBP-003 | protein_coding | Homo_sapiens | 0 | 2603 |
ENST00000400897 | MASP2-001 | protein_coding | Homo_sapiens | 7e-23 | 113 |
ENST00000407792 | RP11-793L10.1-001 | processed_pseudogene | Homo_sapiens | 0 | 387 |
ENST00000439080 | TARDBP-011 | nonsense_mediated_decay | Homo_sapiens | 0 | 566 |
ENST00000442013 | TARDBPP1-001 | processed_pseudogene | Homo_sapiens | 0 | 279 |
ENST00000448913 | TARDBPP2-001 | processed_pseudogene | Homo_sapiens | 0 | 950 |
ENST00000472476 | TARDBP-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 651 |
ENST00000473118 | TARDBP-004 | protein_coding | Homo_sapiens | 0 | 835 |
ENST00000473869 | TARDBP-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 1339 |
ENST00000476201 | TARDBP-005 | protein_coding | Homo_sapiens | 0 | 566 |
ENST00000477447 | TARDBP-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 436 |
ENST00000480464 | TARDBP-009 | processed_transcript | Homo_sapiens | 0 | 660 |
ENST00000496840 | TARDBP-008 | nonsense_mediated_decay | Homo_sapiens | 0 | 427 |
ENST00000523386 | RP11-16E18.1-001 | unprocessed_pseudogene | Homo_sapiens | 7e-16 | 90 |
ENST00000610369 | TARDBP-022 | protein_coding | Homo_sapiens | 0 | 390 |
ENST00000611008 | TARDBP-026 | processed_transcript | Homo_sapiens | 0 | 222 |
ENST00000611136 | TARDBP-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 442 |
ENST00000611963 | TARDBP-020 | nonsense_mediated_decay | Homo_sapiens | 0 | 771 |
ENST00000612542 | TARDBP-003 | protein_coding | Homo_sapiens | 0 | 460 |
ENST00000613177 | TARDBP-027 | processed_transcript | Homo_sapiens | 0 | 222 |
ENST00000613864 | TARDBP-014 | processed_transcript | Homo_sapiens | 0 | 577 |
ENST00000614494 | TARDBP-023 | nonsense_mediated_decay | Homo_sapiens | 0 | 222 |
ENST00000614757 | TARDBP-001 | nonsense_mediated_decay | Homo_sapiens | 0 | 1354 |
ENST00000616545 | TARDBP-013 | protein_coding | Homo_sapiens | 0 | 1116 |
ENST00000617172 | TARDBP-019 | protein_coding | Homo_sapiens | 0 | 1395 |
ENST00000617757 | TARDBP-028 | processed_transcript | Homo_sapiens | 0 | 549 |
ENST00000618606 | TARDBP-015 | retained_intron | Homo_sapiens | 0 | 355 |
ENST00000619555 | TARDBP-018 | nonsense_mediated_decay | Homo_sapiens | 0 | 499 |
ENST00000620028 | TARDBP-005 | processed_transcript | Homo_sapiens | 0 | 459 |
ENST00000620505 | TARDBP-024 | nonsense_mediated_decay | Homo_sapiens | 0 | 219 |
ENST00000620632 | TARDBP-021 | nonsense_mediated_decay | Homo_sapiens | 0 | 715 |
ENST00000621573 | TARDBP-025 | nonsense_mediated_decay | Homo_sapiens | 0 | 372 |
ENST00000621715 | TARDBP-016 | protein_coding | Homo_sapiens | 0 | 771 |
ENST00000621790 | TARDBP-012 | protein_coding | Homo_sapiens | 0 | 1266 |
ENST00000622057 | TARDBP-017 | protein_coding | Homo_sapiens | 0 | 809 |
ENST00000622108 | TARDBP-004 | nonsense_mediated_decay | Homo_sapiens | 0 | 414 |