C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084125 Tardbp-001 ENSMUSG00000041459 10090 - 4:148612382-148627019 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084125 14.515±5.40 6.444±1.41 24.433±5.83 26.245±7.09 12.930±2.98 9.469±1.79 3.979±0.33 10.278±2.82 18.666±3.95 16.300±0.82 6.684±0.58 11.331±4.05 9.999±4.16 8.653±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003690 IEA double-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005726 IEA perichromatin fibrils
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IEA nuclear speck
GO:0032024 IEA positive regulation of insulin secretion
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0035061 IEA interchromatin granule
GO:0042802 IEA identical protein binding
GO:0043922 IEA negative regulation by host of viral transcription
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0070935 IEA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240185 TARDBP-001 protein_coding Homo_sapiens 0 4649
ENST00000315091 TARDBP-003 protein_coding Homo_sapiens 0 1539
ENST00000400897 MASP2-001 protein_coding Homo_sapiens 7e-23 113
ENST00000407792 RP11-793L10.1-001 processed_pseudogene Homo_sapiens 0 387
ENST00000439080 TARDBP-011 nonsense_mediated_decay Homo_sapiens 0 1275
ENST00000442013 TARDBPP1-001 processed_pseudogene Homo_sapiens 0 702
ENST00000448913 TARDBPP2-001 processed_pseudogene Homo_sapiens 0 1426
ENST00000472476 TARDBP-006 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000473118 TARDBP-004 protein_coding Homo_sapiens 0 835
ENST00000473869 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 1123
ENST00000476201 TARDBP-005 protein_coding Homo_sapiens 0 566
ENST00000477447 TARDBP-007 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000480464 TARDBP-009 processed_transcript Homo_sapiens 0 660
ENST00000496840 TARDBP-008 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000523386 RP11-16E18.1-001 unprocessed_pseudogene Homo_sapiens 0 717
ENST00000610369 TARDBP-022 protein_coding Homo_sapiens 0 392
ENST00000611008 TARDBP-026 processed_transcript Homo_sapiens 0 649
ENST00000611136 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000611963 TARDBP-020 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000612542 TARDBP-003 protein_coding Homo_sapiens 0 460
ENST00000613177 TARDBP-027 processed_transcript Homo_sapiens 0 398
ENST00000613864 TARDBP-014 processed_transcript Homo_sapiens 0 577
ENST00000614494 TARDBP-023 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000614757 TARDBP-001 nonsense_mediated_decay Homo_sapiens 0 1138
ENST00000616545 TARDBP-013 protein_coding Homo_sapiens 0 1118
ENST00000617172 TARDBP-019 protein_coding Homo_sapiens 0 743
ENST00000617757 TARDBP-028 processed_transcript Homo_sapiens 0 549
ENST00000618606 TARDBP-015 retained_intron Homo_sapiens 0 355
ENST00000619555 TARDBP-018 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000620028 TARDBP-005 processed_transcript Homo_sapiens 0 459
ENST00000620505 TARDBP-024 nonsense_mediated_decay Homo_sapiens 0 440
ENST00000620632 TARDBP-021 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000621573 TARDBP-025 nonsense_mediated_decay Homo_sapiens 0 942
ENST00000621715 TARDBP-016 protein_coding Homo_sapiens 0 771
ENST00000621790 TARDBP-012 protein_coding Homo_sapiens 0 1149
ENST00000622057 TARDBP-017 protein_coding Homo_sapiens 0 737
ENST00000622108 TARDBP-004 nonsense_mediated_decay Homo_sapiens 0 414

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