C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188488 Tardbp-022 ENSMUSG00000041459 10090 - 4:148612388-148618771 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240185 TARDBP-001 protein_coding Homo_sapiens 1.99993e-41 176
ENST00000315091 TARDBP-003 protein_coding Homo_sapiens 7e-37 159
ENST00000400897 MASP2-001 protein_coding Homo_sapiens 9e-22 110
ENST00000439080 TARDBP-011 nonsense_mediated_decay Homo_sapiens 4.99983e-42 176
ENST00000448913 TARDBPP2-001 processed_pseudogene Homo_sapiens 6e-31 139
ENST00000473869 TARDBP-002 nonsense_mediated_decay Homo_sapiens 6.99949e-42 176
ENST00000477447 TARDBP-007 nonsense_mediated_decay Homo_sapiens 1.00053e-42 176
ENST00000523386 RP11-16E18.1-001 unprocessed_pseudogene Homo_sapiens 7e-16 90
ENST00000610369 TARDBP-022 protein_coding Homo_sapiens 1.99965e-42 176
ENST00000611136 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000611963 TARDBP-020 nonsense_mediated_decay Homo_sapiens 3e-37 159
ENST00000612542 TARDBP-003 protein_coding Homo_sapiens 0 678
ENST00000614757 TARDBP-001 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000616545 TARDBP-013 protein_coding Homo_sapiens 3.00018e-42 176
ENST00000617172 TARDBP-019 protein_coding Homo_sapiens 3.99931e-42 176
ENST00000619555 TARDBP-018 nonsense_mediated_decay Homo_sapiens 1.99965e-42 176
ENST00000620028 TARDBP-005 processed_transcript Homo_sapiens 0 508
ENST00000620632 TARDBP-021 nonsense_mediated_decay Homo_sapiens 3.00018e-42 176
ENST00000621715 TARDBP-016 protein_coding Homo_sapiens 3.00018e-42 176
ENST00000621790 TARDBP-012 protein_coding Homo_sapiens 3.99931e-42 176
ENST00000622057 TARDBP-017 protein_coding Homo_sapiens 3e-37 159
ENST00000622108 TARDBP-004 nonsense_mediated_decay Homo_sapiens 0 409

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