C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nitrogen permease regulator-like 3 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620134 NPRL3-201 ENSG00000103148 9606 - 16:84274-138860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLungOvaryTestisENST00000620134
Transcript ID Adipose Breast Kidney Lung Ovary Testis
ENST00000620134 3.736±0.00 4.636±0.00 3.281±0.00 3.389±0.00 9.360±0.00 3.592±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_0007A5 CIL_0007A5_0002 CGP 16:58059-85853
CIL_00031O CIL_00031O_0002 CGP 16:77007-138860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003281 IEA ventricular septum development
GO:0003674 ND molecular_function
GO:0005096 IEA GTPase activator activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0035909 IEA aorta morphogenesis
GO:0043547 IEA positive regulation of GTPase activity
GO:0048738 IEA cardiac muscle tissue development
GO:0060021 IEA palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020530 Nprl3-013 protein_coding Mus_musculus 0 2104
ENSMUST00000109390 Nprl3-005 processed_transcript Mus_musculus 0 1857
ENSMUST00000141859 Nprl3-001 nonsense_mediated_decay Mus_musculus 0 1661
ENSMUST00000137950 Nprl3-016 nonsense_mediated_decay Mus_musculus 0 1574
ENSMUST00000109389 Nprl3-012 protein_coding Mus_musculus 0 1565
ENSMUST00000124640 Nprl3-002 nonsense_mediated_decay Mus_musculus 0 1338
ENSMUST00000136903 Nprl3-014 nonsense_mediated_decay Mus_musculus 0 1000
ENSMUST00000146890 Nprl3-006 retained_intron Mus_musculus 0 732
ENSMUST00000148636 Nprl3-011 retained_intron Mus_musculus 0 462
ENSMUST00000129010 Nprl3-004 protein_coding Mus_musculus 0 412
ENSMUST00000125256 Nprl3-010 retained_intron Mus_musculus 0 313

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