C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid 5 homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428730 RHBDF1-013 ENSG00000007384 9606 - 16:58062-65039 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428730
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428730 0.582±0.06 2.312±0.00 1.774±1.58 1.472±0.00 1.945±0.00 0.701±0.00 8.400±0.00 1.806±0.11 9.784±3.89 7.383±2.19 2.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355
CIL_0007A5 CIL_0007A5_0002 CGP 16:58059-85853

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146179 Rhbdf1-008 nonsense_mediated_decay Mus_musculus 0 2948
ENSMUST00000020524 Rhbdf1-006 protein_coding Mus_musculus 0 2362
ENSMUST00000143036 Rhbdf1-007 retained_intron Mus_musculus 0 931
ENSMUST00000143988 Rhbdf1-009 protein_coding Mus_musculus 0 741
ENSMUST00000132578 Rhbdf1-002 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000137125 Rhbdf1-004 retained_intron Mus_musculus 0 632
ENSMUST00000142274 Rhbdf1-005 retained_intron Mus_musculus 0 590
ENSMUST00000150381 Rhbdf1-001 protein_coding Mus_musculus 1e-16 94

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