C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25, member 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000013306 SLC25A39 9606 - 17:44319625-44324870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225308 SLC25A39-001 44319625-44324870 protein_coding
  ENST00000377095 SLC25A39-006 44319636-44324815 protein_coding
  ENST00000537904 SLC25A39-005 44319870-44324827 protein_coding
  ENST00000585523 SLC25A39-009 44322527-44324830 protein_coding
  ENST00000585636 SLC25A39-011 44321477-44324827 protein_coding
  ENST00000585695 SLC25A39-003 44320938-44324827 retained_intron
  ENST00000586016 SLC25A39-008 44319673-44324782 protein_coding
  ENST00000586633 SLC25A39-010 44322422-44324822 protein_coding
  ENST00000588049 SLC25A39-012 44321434-44324818 protein_coding
  ENST00000588315 SLC25A39-002 44320629-44324827 retained_intron
  ENST00000588767 SLC25A39-015 44319995-44322445 protein_coding
  ENST00000590194 SLC25A39-007 44319642-44324809 protein_coding
  ENST00000591006 SLC25A39-004 44319627-44324147 retained_intron
  ENST00000591151 SLC25A39-013 44322473-44324806 retained_intron
  ENST00000592372 SLC25A39-014 44319691-44321147 retained_intron
  ENST00000592857 SLC25A39-017 44322439-44324770 protein_coding
  ENST00000593166 SLC25A39-016 44319820-44321524 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225308ENST00000377095ENST00000537904ENST00000586016ENST00000588767ENST00000590194ENST00000591006ENST00000591151ENST00000592372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225308 7.112±0.00 N/A 0.718±0.00 1.832±0.00 N/A 7.786±5.60 0.383±0.00 17.824±13.58 12.528±0.00 15.428±14.01 2.321±0.56 40.772±16.58 29.140±13.11 17.854±2.87
ENST00000377095 9.197±0.00 20.092±0.00 2.405±0.00 4.311±0.00 11.532±0.00 7.367±0.00 6.742±0.00 N/A 6.199±4.67 12.791±0.00 6.652±0.00 33.409±33.41 16.638±2.93 29.144±14.33
ENST00000537904 N/A N/A N/A 5.154±0.00 N/A 9.510±0.00 N/A N/A N/A N/A 2.551±0.00 N/A N/A N/A
ENST00000586016 17.619±0.00 33.026±0.00 N/A 4.753±0.00 32.554±0.00 21.268±0.00 3.916±3.76 62.019±0.00 16.353±0.00 16.132±0.00 N/A 42.496±14.11 31.458±0.70 26.976±9.32
ENST00000588767 N/A N/A 2.686±0.00 1.628±0.00 N/A 3.620±0.00 0.797±0.00 N/A N/A N/A N/A 4.779±0.00 N/A N/A
ENST00000590194 N/A N/A N/A N/A 9.364±0.00 N/A 5.064±0.00 N/A 8.306±0.00 20.886±0.00 4.939±0.00 52.527±36.43 20.484±10.09 17.258±0.00
ENST00000591006 N/A N/A N/A N/A 0.983±0.00 1.167±0.00 N/A N/A 0.268±0.00 0.108±0.00 N/A 1.245±0.00 N/A N/A
ENST00000591151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.781±0.00 N/A N/A N/A
ENST00000592372 N/A 22.043±0.00 N/A 8.555±0.00 N/A 10.965±0.00 N/A 42.536±0.00 19.996±0.00 25.483±0.00 8.659±0.00 N/A N/A 21.392±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870
CIL_0005J8 CIL_0005J8_0001 CGP 17:44319625-44353102

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006783 IEA heme biosynthetic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007449 slc25a39 solute carrier family 25, member 39 protein_coding Danio_rerio
ENSMUSG00000018677 Slc25a39 solute carrier family 25, member 39 protein_coding Mus_musculus

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