Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	solute carrier family 25, member 39
ENST00000225308	SLC25A39-001	ENSG00000013306	9606	-	17:44319625-44324870	protein_coding

Expression Patterns

Transcript ID	Adipose	Bladder	Brain	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000225308	7.112±0.00	0.718±0.00	1.832±0.00	7.786±5.60	0.383±0.00	17.824±13.58	12.528±0.00	15.428±14.01	2.321±0.56	40.772±16.58	29.140±13.11	17.854±2.87

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0009B6	CIL_0009B6_0001	VISTA	17:43966083-44567774
CIL_0007ST	CIL_0007ST_0001	VISTA	17:44247434-44848646
CIL_0005J9	CIL_0005J9_0001	CGP	17:44308413-44324870
CIL_0005J8	CIL_0005J8_0001	CGP	17:44319625-44353102

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005743	IEA	mitochondrial inner membrane
GO:0006783	IEA	heme biosynthetic process
GO:0006810	IEA	transport
GO:0016021	IEA	integral component of membrane

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000107098	Slc25a39-003	protein_coding	Mus_musculus	0	1232
ENSMUST00000018821	Slc25a39-001	protein_coding	Mus_musculus	0	1122
ENSMUST00000153395	Slc25a39-002	retained_intron	Mus_musculus	0	891
ENSMUST00000155104	Slc25a39-010	protein_coding	Mus_musculus	0	785
ENSMUST00000141535	Slc25a39-015	retained_intron	Mus_musculus	0	697
ENSMUST00000149777	Slc25a39-007	protein_coding	Mus_musculus	0	643
ENSMUST00000134669	Slc25a39-013	nonsense_mediated_decay	Mus_musculus	0	514
ENSMUST00000130436	Slc25a39-008	protein_coding	Mus_musculus	0	499
ENSMUST00000154001	Slc25a39-006	protein_coding	Mus_musculus	0	484
ENSMUST00000142097	Slc25a39-014	nonsense_mediated_decay	Mus_musculus	0	427
ENSMUST00000123688	Slc25a39-005	retained_intron	Mus_musculus	0	248

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