C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588767 SLC25A39-015 ENSG00000013306 9606 - 17:44319995-44322445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartOvaryENST00000588767
Transcript ID Bladder Brain Colon Heart Ovary
ENST00000588767 2.686±0.00 1.628±0.00 3.620±0.00 0.797±0.00 4.779±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870
CIL_0005J8 CIL_0005J8_0001 CGP 17:44319625-44353102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018821 Slc25a39-001 protein_coding Mus_musculus 0 782
ENSMUST00000107098 Slc25a39-003 protein_coding Mus_musculus 0 782
ENSMUST00000153395 Slc25a39-002 retained_intron Mus_musculus 0 551
ENSMUST00000141535 Slc25a39-015 retained_intron Mus_musculus 0 499
ENSMUST00000155104 Slc25a39-010 protein_coding Mus_musculus 0 497
ENSMUST00000149777 Slc25a39-007 protein_coding Mus_musculus 0 436
ENSMUST00000134669 Slc25a39-013 nonsense_mediated_decay Mus_musculus 0 436
ENSMUST00000142097 Slc25a39-014 nonsense_mediated_decay Mus_musculus 0 359
ENSMUST00000130436 Slc25a39-008 protein_coding Mus_musculus 0 292
ENSMUST00000154001 Slc25a39-006 protein_coding Mus_musculus 0 276
ENSMUST00000123688 Slc25a39-005 retained_intron Mus_musculus 0 248

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