C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586016 SLC25A39-008 ENSG00000013306 9606 - 17:44319673-44324782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000586016
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000586016 17.619±0.00 33.026±0.00 4.753±0.00 32.554±0.00 21.268±0.00 3.916±3.76 62.019±0.00 16.353±0.00 16.132±0.00 42.496±14.11 31.458±0.70 26.976±9.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870
CIL_0005J8 CIL_0005J8_0001 CGP 17:44319625-44353102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018821 Slc25a39-001 protein_coding Mus_musculus 0 833
ENSMUST00000107098 Slc25a39-003 protein_coding Mus_musculus 0 833
ENSMUST00000153395 Slc25a39-002 retained_intron Mus_musculus 0 603
ENSMUST00000141535 Slc25a39-015 retained_intron Mus_musculus 0 551
ENSMUST00000155104 Slc25a39-010 protein_coding Mus_musculus 0 549
ENSMUST00000134669 Slc25a39-013 nonsense_mediated_decay Mus_musculus 0 514
ENSMUST00000142097 Slc25a39-014 nonsense_mediated_decay Mus_musculus 0 427
ENSMUST00000149777 Slc25a39-007 protein_coding Mus_musculus 0 411
ENSMUST00000130436 Slc25a39-008 protein_coding Mus_musculus 0 267
ENSMUST00000154001 Slc25a39-006 protein_coding Mus_musculus 0 250
ENSMUST00000123688 Slc25a39-005 retained_intron Mus_musculus 0 248

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