C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25, member 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018677 Slc25a39 10090 - 11:102402985-102407946 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018821 Slc25a39-001 102402985-102407544 protein_coding
  ENSMUST00000107098 Slc25a39-003 102402985-102407489 protein_coding
  ENSMUST00000123688 Slc25a39-005 102404389-102407463 retained_intron
  ENSMUST00000124755 Slc25a39-004 102404854-102407946 protein_coding
  ENSMUST00000128825 Slc25a39-012 102403042-102404493 protein_coding
  ENSMUST00000130436 Slc25a39-008 102404609-102406955 protein_coding
  ENSMUST00000134669 Slc25a39-013 102403791-102407508 nonsense_mediated_decay
  ENSMUST00000141535 Slc25a39-015 102404018-102407456 retained_intron
  ENSMUST00000142097 Slc25a39-014 102404062-102407487 nonsense_mediated_decay
  ENSMUST00000147160 Slc25a39-011 102405023-102406808 processed_transcript
  ENSMUST00000147860 Slc25a39-009 102405739-102406884 retained_intron
  ENSMUST00000149777 Slc25a39-007 102404484-102407315 protein_coding
  ENSMUST00000153395 Slc25a39-002 102403145-102407506 retained_intron
  ENSMUST00000154001 Slc25a39-006 102404787-102407383 protein_coding
  ENSMUST00000155104 Slc25a39-010 102404032-102406816 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018821ENSMUST00000107098ENSMUST00000128825ENSMUST00000134669ENSMUST00000149777ENSMUST00000153395ENSMUST00000155104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018821 77.597±8.76 152.733±34.76 40.379±0.57 23.925±11.10 58.507±13.63 66.341±29.01 37.878±18.32 236.083±14.49 167.137±34.12 30.608±11.01 17.851±3.02 66.415±18.04 68.752±25.73 264.596±134.06
ENSMUST00000107098 28.752±2.33 N/A N/A N/A 34.343±10.10 35.371±2.60 23.360±3.19 91.117±27.77 45.937±11.29 18.585±4.70 N/A 31.652±6.91 N/A 93.094±21.74
ENSMUST00000128825 N/A N/A N/A 13.996±0.00 22.388±0.00 N/A N/A N/A N/A N/A N/A 24.961±0.00 14.070±0.61 35.824±0.00
ENSMUST00000134669 N/A N/A N/A 10.846±0.00 N/A N/A N/A N/A N/A N/A N/A 25.137±0.00 19.944±4.44 38.802±0.00
ENSMUST00000149777 75.691±12.40 330.230±51.48 N/A 17.880±0.00 125.519±46.30 142.867±30.96 47.131±9.78 200.386±58.40 250.396±62.85 53.059±0.43 N/A 98.999±25.67 N/A 229.259±29.00
ENSMUST00000153395 N/A N/A N/A N/A 12.171±0.00 N/A N/A N/A N/A N/A 5.843±0.00 19.371±4.19 N/A N/A
ENSMUST00000155104 N/A N/A N/A N/A N/A N/A N/A N/A 66.004±0.00 N/A N/A 71.359±13.63 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006783 IEA heme biosynthetic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007449 slc25a39 solute carrier family 25, member 39 protein_coding Danio_rerio
ENSG00000013306 SLC25A39 solute carrier family 25, member 39 protein_coding Homo_sapiens

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